I overlooked something in my description below (TNX to WA6KBL for off-list conversation). Yes the 1:4 transformer steps up 1V p-p RF input to 4V p-p, but the center tap of both TRF3 and TRF4 is at RF ground, so only half of that voltage is fed to the two analog inputs of the ADC chip (Ain+ and Ain-), so 2V, not 4V.
This Data Sheet has an important note that should alleviate concerns about damage to the device being caused by a 2V p-p input or more, as long as a DXE front end protector is used on the antenna input.
Analog Input Voltage (A9in+, AIin,PAR/SER, SENSE) (Note 3)........... –0.3V to (Vdd + 0.2V)
Vdd = 1.8V
So the maximum analog input voltage would be 2V, or 1V on the antenna connector, but then there is Note 3:
Note 3: When these pin voltages are taken below GND or above Vdd, they will be clamped by internal diodes. This product can handle input currents of greater than 100mA below GND or above Vdd without latchup.
100ma into 100 ohms would be 10V, or 5V on the RF input. 100 ma into 200 ohms would be 20V. This is way more than the measure output of the front end protector.
In sum, as said before, as long as you're using a DXE Front End Protector or equivalent at all times on the input to the Red Pitaya SDR 122.88-16, I don't think any other protection is required (other than lightning protection). The "1V max" is a maximum operating voltage, not the voltage level where damage can occur.